miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|30958703|gb|CD218730.1|CD218730 CTTCGCTGGGCGGAGGGCGCGGGTCGCCTTCCGTCCCGCGGCTCTCGGGCGGCCGTAGGGCCGTGGGACGGCAGCTCCGA
GCCGTGCGCCGTGCCGGCGGTGCGGGCGCGCACGCGGCGCCTCGTTGCTGCCGCCCTCGGCGCTTCCTGCCCGGCGGGGC
GAGCGATCCCAGCTGAGCTCAGGACGGGGCGGTGTACGTTTTTTTTTTTTTTTCCCCCGTTAATCGATGAATGCAGCCGT
GGGCAGACGGCTTTATCATCTGCACGCCGTACGCTTTAATATGATCGGGTCTTGGTGGTTTTCCTGCCGCTCCGTGCCTG
GCAGCGGGAAGCTGGCCGCATTGCTAACGTTCGGGATCCGGCGGTACGCGGTGTGCGCTGTGACTCAGAGATGCTGAAGA
TAAACATAAGCTCATCACAAGGACGGAAGCAAAAGAAGAGTATCTCCTTAAAGACTGTGATTTAGACAAGAGGGAACCGG
NNCTTNGATTCATTGTGAANAAAAACCCTCATAATCCTCGGTGGGGTGACATGAAGCTTTACTTAAAACTGCCGGTAATC
AAGNGTGCCCTNNAAGTCTGGGGGAATGAGGAATCCTTGNNNGANGGAAAGGAACAGCGNNNNGACAGC




Most similar to sp|P27089|XPA_CHICK

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P27089|XPA_CHICK DNA repair protein complementing XP-A cells
           homolog OS=Gallus gallus GN=XPA PE=2 SV=1
          Length = 267

 Score =  147 bits (370), Expect = 7e-35
 Identities = 71/81 (87%), Positives = 71/81 (87%)
 Frame = +3

Query: 387 RDAEDKHKLITRTEAKEEYLLKDCDLDKREPXLXFIVXKNPHNPRWGDMKLYLKLPVIKX 566
           RDAEDKHKLITRTEAKEEYLLKDCDLDKREP L FIV KNPHNPRWGDMKLYLKL VIK 
Sbjct: 124 RDAEDKHKLITRTEAKEEYLLKDCDLDKREPVLRFIVKKNPHNPRWGDMKLYLKLQVIKR 183

Query: 567 ALXVWGNEESLXXGKEQRXDS 629
           AL VWGNEESL   KEQR DS
Sbjct: 184 ALEVWGNEESLQEAKEQRRDS 204